NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004018

Scaffold Ga0214917_10004018


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004018 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16671
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (67.57%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024501Metagenome205Y
F033721Metagenome / Metatranscriptome176Y
F037622Metagenome167N
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F091592Metagenome107N
F098923Metagenome103N
F102823Metagenome / Metatranscriptome101Y
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000401817F102823N/AMNEKMNILMEWIAVGAGLAIGRLLVAIAVITIVTAILAVFFIMEERSK
Ga0214917_1000401820F098923GAGMYYEEIDRRHIKALENILAEGQCEPGRLMGEDAGHLAYIMNQMLYDKFHGHGWELDLLTGRFVRKTGE
Ga0214917_1000401824F057984GGAMKMHKLGKIQITGERKVQMVELDIDVDEETKNIVCHAALREITSDGDALFSYGFNQALKRLIETEGKKCTKKSSSKKRSRR
Ga0214917_1000401826F091592N/AMERLRFVVQRAQREAKAQMISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRVTKNQIGRLSDCNCYRDVKEVRSLVRDIKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVN
Ga0214917_1000401827F102824N/AMTPVRVQQEDGKWRVTTMAGNPIGPRLWGAVPPNGLPSIDDLFSEKSDAQNAADLWNAYALWCKERSGKRKRR
Ga0214917_1000401829F039993N/AMKLALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSDLDDKGVIWKDAK
Ga0214917_1000401830F033721AGGAMRWIKKELDNEGKLEWAVYIDQTGESNESEWSHFDTYKTRDDAVQACWHFTWEDYDCSDK
Ga0214917_1000401831F039994GGAMNPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVVRALFAWVQLKKGLPRL
Ga0214917_100040188F024501GGAMDKKDKHMTHPKQLDEVGITESYLRKMAKKEVVSYKRAVQIAMEQWGEYSLKLINKMMAEEIKTR
Ga0214917_100040189F037622AGGAGMTEDQIIKAYLSRLGKKGGSVTGPAKARKMGKEHYQMVAHRQRERWDKWRLENGRPAIKRER
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