NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10005309

Scaffold Ga0214917_10005309


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10005309 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13816
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (71.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025466Metagenome / Metatranscriptome201Y
F037732Metagenome / Metatranscriptome167Y
F054668Metagenome / Metatranscriptome139Y
F075841Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100053092F037732N/AMLQITISIGDISTDLTTDANLSFDAIETLLTRAAQTTLQSYLSLPPEDRLASFGLEDDDGDDDS
Ga0214917_1000530921F075841GAGGMRMDRKFVRRRRVALVVALVALVALTYGTRDLCWTGSGYGSCSAMIDGVISDGR
Ga0214917_1000530928F025466AGGAGMNKPALEAIIKTYLRAAAAAAAALYLADPNQPAKNYLVAGLAAIAGPVLKALDGKATEFGRGAK
Ga0214917_1000530931F054668AGGAGMGISTRQVTVTTAATALVDATQEAEMVYLHSSSGTCFVGNSDVTSSTGYKMDNGDKITIDNKANGIWAITSSGTVTMQVMAIGK
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