NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10005478

Scaffold Ga0214917_10005478


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10005478 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13548
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (48.39%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F002060Metagenome / Metatranscriptome597Y
F008814Metagenome / Metatranscriptome327Y
F028150Metagenome / Metatranscriptome192Y
F040629Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000547810F000473N/AMFIDKDKNHFKHGINQWTGDPNKPVFYTPEMSKAIRGITKPANNLQMDIVKYPEFLAIRLYEDNFVQFEGVKKEMVIDYVAKVKKLLESYGVRCELEGVPSERILR
Ga0214917_1000547812F000671GAGGMDKVLCYCCNKTKNKLNLKKSTLLPINLFMCDGCIESKFEPRWLVIITGRQNGPESVREFVLKKKYVGDEISASELLI
Ga0214917_1000547813F002060N/AMNLDLNSIIIAISAAILSGMGTAIIAGLNENKREKNRKQEREQDHLKLEVKDLKIELYKIEKELTEWKDKYYSAIQELILIKSELEDALRSLSEMDSNEVLDR
Ga0214917_1000547818F008814N/AMANMTVLEEIIKEIGEELYQKWYNALAVEDRTEESSKAMAINAGETTFWVVQTFMNKFNAAAEELKDK
Ga0214917_100054782F028150AGGMNMNWLKKWGFAALNENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFMTIGIREKAEKED
Ga0214917_1000547827F001280GGAMCYECGCESVGSETGIASVSILDVTRDGEAGLTLNMTSTPEQTRQFINE
Ga0214917_1000547828F001176N/AMSENGTGMATPPNNEPAGAVTSQEATRKNPSQGKFRSGIANQRSLTRVDRNKHGIRRETNMGPKKTGRPKKV
Ga0214917_100054786F040629N/AMNVYKAKLEVEIEINAFNEDDAKDYINDIFGTDDEIKNIKIINVKEK
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