NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10005633

Scaffold Ga0214917_10005633


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10005633 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13311
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F004761Metagenome / Metatranscriptome424Y
F012663Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000563312F004761AGGCGGMNLADVRTMVRDISDLDTVDLPNSLLDTFVKEAFQRIVALERRWPFYQETYTLNTVANQRPYTISAIGDIREIISIVETTASGNRFTEIAYDDAEEVWLGNTDVASRPYFWAVWDGQIHLYPKPDGVYPLTVRAYRNPSYTWLSNTATEIDADNWFHILLAYYALARVYQRQEDNEMAMMYQRSFEEGVAMARRDLMKARSHRPLLLSGGKKYPTMRRWLQTLGATLGS
Ga0214917_100056334F012663AGCAGMQKIVCEECSRVFEAEELPRRGAVCFRCHVKGVRLGFTYGREDFHGPTIRERQRQTVEQAKINGYNAEPVTNWM
Ga0214917_100056335F001396GGAVETILVPIAVAVISGPIVVLLQRLRKENAEQHAEGRVLLRNVAHKVDKVASKLDEHIGWHKGKEA
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Institute for Fundamental Biomedical Research
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