Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10008143 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10393 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (43.75%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000557 | Metagenome / Metatranscriptome | 1026 | N |
F025272 | Metagenome / Metatranscriptome | 202 | N |
F032960 | Metagenome / Metatranscriptome | 178 | N |
F034851 | Metagenome / Metatranscriptome | 173 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_1000814315 | F025272 | N/A | MDILVFPILISALATLAVVEFRVLPQWFYALPFAKRKPFSCMTCFGFWLGVLLTLPTCQWYLAPILGLASSATAIIIREWTFK |
Ga0214917_1000814316 | F034851 | N/A | ERVEVDPETQELSKDYDSLLDDLWAIAQSEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIEANGYTGFSNPD |
Ga0214917_100081433 | F032960 | AGG | VATPVYNKMLFKVSGSLTAQTNYRYVCDVKNPAGTTLARLKCDKLPSTNYGFFDVAKVVETLITPTKPALTQTGFVDHAGYYAGYRLDFMEEYGNTPVVYTGTVTTVSGRVAFAGNLEQLELATWSGGLYFPSGAIVNDTTRMLTTPTTRTVYADGYGWLSIGQFNYGVEKAYIQYWSATGATFARQFDVSASSVSGSNVVRFGVGPMNLKALTSGQCSDGLAGSVNFQGNAGDFYDVYFQKGANITIRQRYVIGQCQRFNSIPVHFQNKYGGIDSYTFTLKNRKRANISRQTFGYNSDVYATTTYDKVWAGDFDYVYALNSDWLTDAESAWLIEMIRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEIAVAYKNNIL |
Ga0214917_100081436 | F000557 | N/A | MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMSAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDINTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSESYLKVLSDYSKHLMTKAEGLT |
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