Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10010688 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10010688 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8576
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8576

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (57.89%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011753	Metagenome / Metatranscriptome	287	Y
F033721	Metagenome / Metatranscriptome	176	Y
F039994	Metagenome	162	N
F057984	Metagenome / Metatranscriptome	135	N
F091592	Metagenome	107	N
F098923	Metagenome	103	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100106881	F011753	N/A	EKTHWCEKALVGPGYAGRCDAYVRLKGIGDAIIDLKNRKVNPKYDPFYDTDCAQLWAYKYASENPKCACVSVVLAANDPETLVMHKWSDDELYQAGIAFQAMLKVWSWSKKYTPPGMKL
Ga0214917_1001068810	F098923	N/A	MYYHEIDRRHIKALEDILSEGQVEPGKLMSDDAGPLAYVMNQMLYDKFHGHGWELDLLTGRFIKTK
Ga0214917_100106882	F039994	AGG	MVKEVYPARDETVMENPPTIQEMADAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENSLDHLERAVVRALFAWMQLKKGLPRL
Ga0214917_100106883	F033721	AGG	MDAIKERTTKTMRWIKKELDEEGKPEWAVYIDEYGVGNEDEWLHFDTYKTRDDAVQACQHFTWEYYDCNDK
Ga0214917_100106885	F102824	AGGA	MTPVRVQREDGKWRVTTMAGNPIGPRLWGAVPPNGLPPIDDLFEDKSKAQDAADLWNCYASWCQERSGKRKRR
Ga0214917_100106886	F091592	GGA	MISAQFTRGDHDDRIKQLAGEVAIRAIQDIRLLQRRGVLDGMRLTKNRIGKLSDCNCYRDVKAVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGLKNVN
Ga0214917_100106887	F057984	GGTGG	MRDNRIHDRVSGGLHILALRPGEKGKIQMGGLGQIKILAERKVQMVELDVEVDDETKDKVCHAALREITSDGDALFSYGFNQALKRLVETKGKKCTHKKSSNKRSSRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10010688

Overview

Ecosystem & Geography

Associated Families

Sequences