NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10010748

Scaffold Ga0214917_10010748


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10010748 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8544
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029091Metagenome / Metatranscriptome189Y
F035280Metagenome172Y
F054812Metagenome / Metatranscriptome139Y
F066709Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001074810F029091AGGAGVGQRAVKKKGQYRLYKVEGYGYYEIYYGTKETGVHVENISEKENFEWAVAEINRSFQQAMKEEFGIGVSN
Ga0214917_1001074817F054812GGAGMNEQEVNKKFDDLVQPKIIQQVIKQKREPAKFPELRYLWGIALLGSFVLIVISAVISTVLEAL
Ga0214917_100107483F035280GAGGMEKKIGKYWFCWGRTSGFALGFNISKYNWGIELGFWYIGQEF
Ga0214917_100107486F066709GGAMEYESVKRSDWDLDLRFGQEGEVLVNNLLTAPIETVEVKRDRRWKDTGNLYIETECWSDVLGCWYASGISVSKASHWSFILEDSVVTVPTDRVRLAIAQHGLKREMNRPEYSTKGYIITVAELLKVSLRHHQSASQSQPT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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