NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10019225

Scaffold Ga0214917_10019225


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10019225 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5686
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033721Metagenome / Metatranscriptome176Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F091592Metagenome107N
F096882Metagenome / Metatranscriptome104N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001922511F102824AGGAMTPVRIQREEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKSKAQDAADLWNCYAAWCQDRSGKRKRR
Ga0214917_1001922512F091592GGAMISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNQIGKLSDCNCYRDAKEVRSLVRDIKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVN
Ga0214917_1001922513F057984AGGAMDGLGKIQILAERKVEMVELDIEVDDKTRDTVCHAALREITSDGDALFNYGFNQAIKRFIQTKGKKCTKKSSNKKRSRR
Ga0214917_100192253F096882AGGAMANHKRSLNESIKAWRTFEEALKNLEGFDACAKWVIDHPEICKKLSGSGLMAVMKEDLKKKLD
Ga0214917_100192257F039994GGAMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRALFSWMQLKKGLPRL
Ga0214917_100192258F033721AGGAMRWIKKELDDEGRPEWAVYIDKTGESNESEWSHFDTYKTRDDAVQACQRFTWEDYDCSDK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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