NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10029077

Scaffold Ga0214917_10029077


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10029077 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4206
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F028151Metagenome192Y
F083918Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100290774F000141AGGAGMHTRFKCNGCSRKTEFLWLDQLDMPDGFKAYQCMECGCVGVKNIAEALDIPDSDISRCDKCGSWKFIAVVCHTCQLIRAK
Ga0214917_100290775F083918AGGGGGMGFLEIIDGSGYLARFENDKITLEPTSDKCMACNDDRLLHDGQYLVCTQCHCRQ
Ga0214917_100290779F028151AGGMNPLQDLRDIGYVIMWSIMGLILIAWIIHEIRDTAFQNGYWKGRAQGWESHRRLMNTKLKSDQVFDYDKN
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