NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10036857

Scaffold Ga0214917_10036857


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10036857 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3546
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033721Metagenome / Metatranscriptome176Y
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F091592Metagenome107N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100368571F057984GGAMNMHKLGKIQITGERKVQMVELDIDVDEETKNIVCHAALREITSDGDALFSYGFNQALKRLIETEGKKCTKKSSSKKRSR
Ga0214917_100368573F091592GGAMISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDVKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVN
Ga0214917_100368574F102824GGAMTSVRVQREEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIDDLFEDKAKAQDAADLWNAYALWCRERSGKRKRR
Ga0214917_100368576F039993N/AMKLALSWICYWIGDLISITLMRYGYGYSLYNKLMLLSSDLDDKGVIWKDAK
Ga0214917_100368577F033721AGGAMRWIKKELDEEGKPEWAVYIDQTGESNESEWSHFDTYKTRDDAVKACWRFTWEDYDCSDK
Ga0214917_100368578F039994N/AMGVVEEVQSARDEVVMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDESGENALDHLERAVVRGLFAWQQLKKGLPRL
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