NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10049362

Scaffold Ga0214917_10049362


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10049362 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2867
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F009266Metagenome / Metatranscriptome320Y
F010618Metagenome301N
F027179Metagenome195Y
F060914Metagenome132N
F101144Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100493623F101144N/AMEAKTFTFYSTERHGYVETTRAYLRKLKISKLISPYSRQSGNKVYIEEDGDLSLFCKRHTVAGISIVLKEEEKPQSFFDNMWNYRDDECQDEQFDGFKSEWSLSQRVHFVKPDNIKHVRNSTFETKDGKCLKIVPTFYLDGKALNESQLKKLGIELTTITTGELDYEYEH
Ga0214917_100493624F009266AGGAMTDKERKILDKEIQYLCEQQDRVKAIREYTNINPHYTFLKEVETIEGLYKWVLENRKKEESTYFSCGTSGWYVVYLRDKKKYKKGEDFRIKIFHTFVWTDNLE
Ga0214917_100493625F002398AGGAMIPLISIFLLTSLDPIKNFVSLKTYISENAKIHCKAYSINEDIPDYPRVNVIEKNKFDFFAYLDTIGIEHSQVGSYYFFYRKPK
Ga0214917_100493626F060914N/AVQQKDTQLKRLIKVRSDISASIYPIQLFQVDDYFTAEEDGVELFRYKSQHLCSIKAKELIRKRKNEKNAQIIQNIKELKEQGIL
Ga0214917_100493627F027179N/AMADGLFLYEKENSYVVMDQYDNVLKELKTSASCARYILKTLQSRRAAERYAIEEINKSKV
Ga0214917_100493628F002406N/AMENLKWIKAMSDRLRDELSKEYDDDTKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFDDETDIHG
Ga0214917_100493629F010618N/AMTLQELIAKLQELEKKYEMYSQDIEVVLAIHSENEFNPEVQLDYIDEVVHPALDTHSGYLCRIVLCGEYYQQD
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