Scaffold Ga0222622_10031737

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0222622_10031737

Scaffold Ga0222622_10031737

Overview

Basic Information
Taxon OID	3300022756 Open in IMG/M
Scaffold ID	Ga0222622_10031737 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2823
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9201	Long. (^o)	-106.9487	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003201	Metagenome	501	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222622_100317372	F003201	N/A	MVSLVFLGLAIVCALISRILLLIAAINISAGWAFGVFLPFGPLFFRLNYPEAARNSFLFRVATLLCVFGFVISQPRMTLHMPKIHPTATSPRVSKQTVGYAMEKPGTSKKVVGTPTAAPAPTLEQRRAANATELERLRGVEAELKLRKRDLLHSDSEGNRIYAIDLASYNEALAKATVEKNALAAAK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.