NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222622_10589169

Scaffold Ga0222622_10589169


Overview

Basic Information
Taxon OID3300022756 Open in IMG/M
Scaffold IDGa0222622_10589169 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)802
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032975Metagenome178N
F069782Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0222622_105891691F032975N/AKCTEIGLPTTFMVGVDPAAGLLRGELISNSSAARELDYALGISVGRFTIELSDRYNAIARACREGRIVTSPTLDELVHPLRDADGAATLERLVQGGRSTIIPITVSGDVVGALVVGPMADEPGFSTIVKVRDLVNETASRLTEAWRTKR
Ga0222622_105891692F069782N/AMVGEVTFAVIGLLFLIADIRTFSSTFQLTFFGQSNTTLAIMATSVFATSFLAPIVGWRLGPKRSVGMSAAMLGIATLIATVSRNNSADLALSIVGIAGGLWWLGLLHASRP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.