NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242728_112359

Scaffold Ga0242728_112359


Overview

Basic Information
Taxon OID3300022766 Open in IMG/M
Scaffold IDGa0242728_112359 Open in IMG/M
Source Dataset NameMicrobial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S1 Version 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Sponge → Unclassified → Unclassified → Marine → Sponge Microbes In A High Co2 World

Source Dataset Sampling Location
Location NameDavies Reef, Great Barrier Reef, Australia
CoordinatesLat. (o)-18.833Long. (o)147.683Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010384Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
Ga0242728_1123592F010384N/AVYYKFISGGQMQPQLGMWKRFIRILSEVDRCSLSWGSGSGLLEIYLRWTDADSAGDLEEV
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