NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222707_1007123

Scaffold Ga0222707_1007123


Overview

Basic Information
Taxon OID3300022832 Open in IMG/M
Scaffold IDGa0222707_1007123 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1574
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1531
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003552Metagenome480Y
F020853Metagenome221Y
F061579Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0222707_10071231F020853AGGAGMIFLFKNNYIVIYKMLSNHDIDVLVEKLNIPNFRGCFYKDKLKSIQPNSSYIINLNSELNEKGNRNTGSHWCCLVTDDMKQCI
Ga0222707_10071232F061579N/AMNITLDLSKGQLSKLRNGHGIRITPTMLGSGVEMIIDPMTYHNISKKMERGKGIVIKMGSNEIEMNKMEGTGLFAGAGNQSGKISRVKKAGKWTGYVNDTARMGIDTAAYGYKEYQKAKNPIGSKVKSWFGGGDMEGGKISMSAIKQSYNKNVKNTKLGKALKETAGNAFGDVYDKGTEMIGNTRHLGGVADALKKGKKGNISKLTQLSGLGLKLQGEGMTDARYRRPITMGNGMRMGGGACHSCNGSGMNDKFIFENVSL
Ga0222707_10071233F003552N/AKAVLIIPQLNTLNNNVNAFDDGLPQLMGHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGINGNQSSGLGSSLIDFKGWLKKPYYYVNCSRVPLEQQSAYRSLQIKGTNSSSLAVDYVIFAIYSKSFSLDVISGNITKTD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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