Scaffold Ga0222711

Basic Information
Taxon OID	3300022837 Open in IMG/M
Scaffold ID	Ga0222711_1000729 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022837 Open in IMG/M

Scaffold ID

Ga0222711_1000729 Open in IMG/M

Source Dataset Name

Saline water microbial communities from Ace Lake, Antarctica - #1699

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9027
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9027

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Ace Lake

Coordinates

Lat. (^o)

-68.4725

Long. (^o)

78.188

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F002602	Metagenome / Metatranscriptome	544	Y
F004614	Metagenome	431	Y
F008154	Metagenome	338	Y
F056138	Metagenome	138	Y
F096209	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222711_100072917	F002602	AGG	MKNTDQIKALAVAIEEKDNNIRMLLAQQGNHEVQIAEYREIVRELSAKLELYENKYGTVFKPSRNS
Ga0222711_100072918	F004614	N/A	MYSHHEIDVDTDEEFWPVLGILLAIWGAWTGVVHFLDWLTVDAIAWYVEPWTILPFLFLLVMKEKFDSLNPLHWWPMVWGYKIKLPDDERITIYPINGEDLIKEHGGPLHIHIVDYEHIKFRRKKDAVMYALRNF
Ga0222711_100072919	F056138	N/A	MKTLFINGCSFGTHWTNPSPEFVAALDCDNVTNLSKVGTSFQRACRSTIEWIAQNGNPRMVLIPITFAHRWELALNQDEDDIDGSWVPLQNSNFLSDDYKVQESSIDDVKKLVDQYYKIIPTIKTHWDKMFTDIITFSAFLEKQKINYLMWDMCNGFDKEHLNINIEPYKGFHKIDLISQNPRIIDIWKFCGNRYMRDTMPEDLRQKTPEFAHHHDSTRYKELEKYIIEYINNIK
Ga0222711_10007294	F008154	GGAGG	MNKDKEAKDLNDCYQELFKTVIALQARYNNQMIAGTMMAQALRIYKSNLTEEGFQAMVQTIADSSDTIEPFDTPSIN
Ga0222711_10007296	F096209	GGAG	MTVAIQTKSINDIYEEMTESYSLGEYLDGYTSYGEDALMTPDKFADRFQHICFGFGYREAEIIPQKLEIKEWCQEHLDKLESRFR
Ga0222711_10007297	F000379	AGGAG	MKIDYENKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTREDAMQVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWNKEVMRKDVGHLFLFMKGTWQYSDNGIDWWPAKEAFVDTSDTAFTNIREALETEKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222711_1000729

Overview

Ecosystem & Geography

Associated Families

Sequences