NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224549_1004385

Scaffold Ga0224549_1004385


Overview

Basic Information
Taxon OID3300022840 Open in IMG/M
Scaffold IDGa0224549_1004385 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2209
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0472Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010410Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
Ga0224549_10043851F010410AGGAGMPMSKINPGISLKTFQGGISAAFAIAILLIPAAFADDTKLSTQNRNSENRNADQQTYCRYLTEQAAAQRDLLMAPNAVAGVTQSNTGLPMQAVWGVSGNLSNVRKGTLTMDAARKNCELYTATTSTQQDIQYALPNLEKQALQNRLELIQQATDSLDALTATTRKMLEAQNLTRPMAFALQTTKIKLDADRADTQTKVVSIYIPQLSDRPLKELIAEKQSREVTEQKAVDKLNRQNNWDVALSVGEHQQIDPWIDSHGTYGEVSISYNLASHTINKHLDQAANAYDDWKKVQEGDVIRNAEILKQQVADGITVQDGRLKALQEEQKQIESNLQLVTSAETTA
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