NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222632_1070869

Scaffold Ga0222632_1070869


Overview

Basic Information
Taxon OID3300022842 Open in IMG/M
Scaffold IDGa0222632_1070869 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #46
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008849Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0222632_10708692F008849N/AKDEMAYKYSLKHYDQNILSKVDSEIIQMWSFRPFETAGKDAGIKLNTGKFIDESMYAFSGGKENSSEGNINHMTAEQNQQWAERVYDRIS
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