NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222631_1002102

Scaffold Ga0222631_1002102


Overview

Basic Information
Taxon OID3300022843 Open in IMG/M
Scaffold IDGa0222631_1002102 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4562
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010776Metagenome / Metatranscriptome299Y
F012716Metagenome / Metatranscriptome278Y
F040002Metagenome / Metatranscriptome162N
F078421Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0222631_100210210F040002AGGAMNIKQTVIFAFIVTIIGFGFKDFCPNYKQLEKSRSLIEKVADGKVYEWAITKKCKLSIVSIDGVSLEKYMKENFSKIKDDEEIKQLEKMFK
Ga0222631_10021022F078421N/AMKILKSIEKIKEALDEEDIHPPEATLSMMMKNKTYKCGCGSTHPVDTTPVGAACRGRSIAHSGVGKGFILLCDTHATLVVTEGIFNYTFKSIWTFEKNLMPGHW
Ga0222631_10021024F012716AGGMKVIKTVKELMTAFTEDTPMPAGVMKTEGYGNLGFECGCGELHAVNGYDVQQIASFRPIKILFKCSTHYTKVRIKGIFSQTCISEWTCKNSIAGDFVKKHDL
Ga0222631_10021029F010776N/AMILARLKWNTKLVEVDEFVTKFKRKYKNNDLRIDVKLTDTECLIYFYRKLH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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