NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222699_1013489

Scaffold Ga0222699_1013489


Overview

Basic Information
Taxon OID3300022846 Open in IMG/M
Scaffold IDGa0222699_1013489 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1452
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1792
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027899Metagenome / Metatranscriptome193Y
F052475Metagenome142Y
F068214Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0222699_10134891F052475N/AMLPIMNEYARISQIHYRYQQGENKEKQDAYATKKLSRLGYNLDANNTNKDVLTATKGDKVHINYTGTNINNPRDLLSDVALGTGTQRSNPQFKQRRQKTRDIMRQYGD
Ga0222699_10134893F068214N/AMALQHMTVKLVPQTSSVIPPGKFIYTDETFLIQPPKYIQGEAFPQQGKALVPAHFSYGHHNPDFTPIYTPPTQLAMNYNTYIYNSVTGYT
Ga0222699_10134894F027899GGAMSKDIVMYQLDTPYSSQILFLNSENSIFKNIDGEGSYQYDFQTPIQLPTNCQMLISITDAQMPNIIPNVSSSNNTISFSIPTFSKLFTITIREDDGITDRVYNVQEWLAVVNEKITYEAVSQFSLYGGFNTSTSKITWYCNYPFQILSNVEYPTTCFDLIGFKKNRFNEVVY
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