NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224531_1000076

Scaffold Ga0224531_1000076


Overview

Basic Information
Taxon OID3300022849 Open in IMG/M
Scaffold IDGa0224531_1000076 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60834
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (92.41%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039069Metagenome / Metatranscriptome164N
F042873Metagenome157N
F071177Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0224531_100007638F039069GGAGMSNLLSRTPFGPMSLYPICIAENLKAINRRSSRWQVLEAFLLSSEGRAERVFEGSSGLVILMAIPDQPGTGAFYIYDEIRRAFSMVNFADQDTFHSSMFDYVVQFYDLGRFVELPKLTLVPKPTVHAADGGSGIVIKGNKVNSNSNRRRSNWYRGPRVPQAVVNAAGRTHMGLVTA
Ga0224531_100007664F071177GAGGLNTHASAEKGTAAIITAAASVEKVRRPRKGSAGQDTTSCKFYIGEIKDGLPVMSKEVSEKDALLDCVRTQRPFMMVQLWKTAEEIEDGRLVIVKTPVVSK
Ga0224531_10000768F042873GAGGMATTSPQFDLKGHLLSLRGLTPKSTKMARFFDANHILIAERPVTAAECWNAGASCWSNFMLADGPTARALGAASVCFI
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