NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224528_1005733

Scaffold Ga0224528_1005733


Overview

Basic Information
Taxon OID3300022861 Open in IMG/M
Scaffold IDGa0224528_1005733 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5013
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040983Metagenome160N
F053011Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0224528_10057332F040983GGAGVDFYRDISATIDLREELHSVIHGSEEIVGQGRTVILRRMTNTTCPGCWDPKTGGSVRPNCRYCQGEGWQFHETQEIMALYRGVAPVYKPGVLATGEYPQNAMGYTDQNRCTAYVEVFRDDGSQVYPDYERYTLQTAKAYDKLYETKVDPEGNPITDSSGRFTRTVKWKVLSVVPTFGDNGRVEFWELGLEKENV
Ga0224528_10057334F053011AGGAGMSAITRPSSILPPLRSSKPAADINGFFQIVGQALAEFIKTEGAPEGTVPVYVETFPKERLSEPDTAFDVILFHVVSGEMAPTSNDGATVPRSPMLRNVARIPSQAGYNLAQYGWWENYTVEFEVWSKSNSVANSLAVWFHRFLIRYAYYYKFFEAFGVQQFKFAGRQEDKSDEKENQELQIRRLRYSFRLEFLDTFTERQLTDLTLNFRIKRDVQTVELDTAQQHNAEHERFRFPVSNPV
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