NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224528_1012170

Scaffold Ga0224528_1012170


Overview

Basic Information
Taxon OID3300022861 Open in IMG/M
Scaffold IDGa0224528_1012170 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2512
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F026465Metagenome197N
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0224528_10121701F003389GGAMQITVWSVAADDDNGTYASVHETESAAYRRLIQLTVDADNKDDMAKAEAFMEAEDFDSLDEWIHEDVIEPLNTYSVDQHKIDVPTTPSSADDGNHITRRELASILHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEGDSPLGPSEIDELCERLN
Ga0224528_10121702F003942GGAGMLGHRLNPTIHRYEDVEIIEVHSEYLECSFMVAKDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHTIYAENLSAMLYGDGLDPARS
Ga0224528_10121703F042119GAGMNTIIREVNPARLAWGTFDHAKSDYMNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVQIVASQHEDVFVPQVQLALF
Ga0224528_10121704F003764GAGMQIQLDSPYIHDENPAALLAGAEIEAAGLHHCLKIVRLWSQSNALPQSRHDEMIEEEQRLAKLYAAILFEIGSAFGIEQADELKVRIEAACILNNWECPPAEQGLLFPIPNDPTTEASHATARK
Ga0224528_10121705F004301GGAGMTAMQFSLFDARPSAATLGMEPSVNARNAKRKLDTLRKQLATAQADLEDVNYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRFGSYPVKVLRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0224528_10121706F026465N/AECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAEADAAAATFREGRDILARTDVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNAPRGTVANTVGKLREIAAESIQ
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