NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224527_1003575

Scaffold Ga0224527_1003575


Overview

Basic Information
Taxon OID3300022877 Open in IMG/M
Scaffold IDGa0224527_1003575 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5829
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047426Metagenome149N
F057826Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0224527_10035751F057826AGGCGGMSSTRTGQNIDPQPIPDAETRTVPRPKTAATRLSVEELEEVESAAKRDGKSQAEWIRDTVLRERGSGQPRSI
Ga0224527_10035752F047426AGGMDPRYCPAGARQRSASVDLVLAELSANRVIPDQIAQQVSRTTQEVSRLVGQSADQALARIEAGAEKAIRNATIREVGAKIESAIAGPMAITEEALRKLRSSAERAETASSSWRSFTDIFRWQQLAIAVLVGIVIGGAGTWYFASLPLKEAADYILLLKNAPASPQNATQSTPPASHHIQHNQKPKSTQETQPQTEAAPVTQQP
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