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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022881 Open in IMG/M |
| Scaffold ID | Ga0224545_1000004 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 228188 |
| Total Scaffold Genes | 202 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 158 (78.22%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0471 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005215 | Metagenome / Metatranscriptome | 408 | Y |
| F053425 | Metagenome / Metatranscriptome | 141 | Y |
| F064994 | Metagenome / Metatranscriptome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224545_1000004143 | F053425 | AGG | MSSPLPELNAGAEQCLLSRWQLLVFLRSSDPFRGVRLMRQGCLRICAVLITLLAVGLGGFSPRPARAESKYMFLTVTDYEAGISYRQAQWHAPIGHLINPCSYADHFVATIDWNDGSGEHKPDTNVQTRMLQTIPVVQSGIYLFWDDEHVANRIGTQVVTTKVALHCAGDPAGDREYIEQNEVTIYSRIPVNQVEFTKNGKSISTVKGHDNVDLTITLDAPAPPSGTWVKLEVMPAGNLNTLPPYVQVSGRETQETIRNLELKKPDADFGIVVTASTVGRSQESQKLTVTP |
| Ga0224545_1000004162 | F064994 | GGA | VYRASRIFLGRPIQHFDTSLIPILAFTTPGSHNRGVLRVRVSELMRSRLFKASLQIATVVLLLFAVAGLSTLAKNSQYFAKSNPTHYVNIATKMKVAPTPVALERAPLCPVARVLPPQPFATRNHGVEEICLPSPSIAVTVSIQHRSPPSSRS |
| Ga0224545_1000004165 | F005215 | AGGAGG | MLRKMSLGIVAGAALTLISPIFLPNHTRAAAQDNSKSEKIERTTVLAHLPVPGSAVRQIFLQQENGAQYLYLQQNVHFTVVNVTDPKNPQIVERVASGGKLTDVGAGLAIAIQSDKSGQGTAPTQSVRLMDLSDPKNPRTVKSFDGVTSIYSEDGRHLIYLTNSEGLWIVKHSETHRLPLCNSDSWEEAIAQCQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |