Scaffold Ga0247787_1000021

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247787_1000021

Scaffold Ga0247787_1000021

Overview

Basic Information
Taxon OID	3300022893 Open in IMG/M
Scaffold ID	Ga0247787_1000021 Open in IMG/M
Source Dataset Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11495
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (80.95%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099509	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247787_100002112	F099509	AGGA	MKKLYGMLAGIFLVSCGTGQAATFTQSDFAGTGSFGTATAACQNALCTDVHVDVNMDPNILLQTGSHFLFTLSLAGSGVIDPLSIALGQGSDIQVLAKTSPASYSNSPFKFFNTGISADCGSGGSSGGCGSTLSFDIDNFSGFLFATEQFNGFNIIAAADILLTNCTGACTGVVGLTGDLTPTPFDVPGETPIPGAVWLFGGGLGLLSMFGRRKKKAPQAWSKYPEAA

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