NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247768_1000009

Scaffold Ga0247768_1000009


Overview

Basic Information
Taxon OID3300022910 Open in IMG/M
Scaffold IDGa0247768_1000009 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L016-104C-6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)236372
Total Scaffold Genes259 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)187 (72.20%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017066Metagenome / Metatranscriptome243Y
F055613Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0247768_1000009180F017066N/AVILPLAHHNAIVALPVFAPALIVILVLVVHHLRERRHWDDEEETQA
Ga0247768_1000009202F055613GGAGGMKPGNRETIPTISEAVREATAIVDPEGTDTAVLGFFESFEDDDRPTTAAEDLRGVLFSTVKGIDPEGDDPAALAAAAAAFWLATNPGQADNGDHVLREGVRLAFEGKPPEPLADWLSARGVDL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.