NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247768_1000022

Scaffold Ga0247768_1000022


Overview

Basic Information
Taxon OID3300022910 Open in IMG/M
Scaffold IDGa0247768_1000022 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L016-104C-6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139283
Total Scaffold Genes133 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (63.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004821Metagenome / Metatranscriptome422Y
F020958Metagenome / Metatranscriptome221Y
F031074Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0247768_100002215F004821AGGAGMTRRVEQTRFRSRGRLTGLVRDESPAGIGQNRTTQTDNRESELRGADEALFYRARLILGDSLPRPQR
Ga0247768_100002227F031074N/AMATAVKSLHVGELVDVDGRRYEVVPDGAGDLTLEPTITPMAELDRRRGAKPASREDFDRLFGHLPTDGEG
Ga0247768_100002245F020958N/AMSTTTTAKKWTCDQCGVTVSRVGGEKVELPPSWDNSKEGTFCLLCRRERAAQAALAAAPQGSIEDRAKLRRAALVEFEVRRRPGHGNGEIAKACRSSVAAVVAARKRLKIPAPTN
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