NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233433_10008314

Scaffold Ga0233433_10008314


Overview

Basic Information
Taxon OID3300022931 Open in IMG/M
Scaffold IDGa0233433_10008314 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)7105
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006550Metagenome / Metatranscriptome370N
F056157Metagenome / Metatranscriptome138N
F056357Metagenome / Metatranscriptome137Y
F106115Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0233433_100083142F106115N/AMAVATAATIQAHLIGATYPEGTLSKNNIFDYEQYTTRRRYPSCEVITTQPESTVETKKSTDTTIAFEINYYDKNLGLRTDDVSTQREVENVIRARMETMVLQDYKVVFESKSWSRQSVQRDGSHPAYLISTLKITVRQVNVTVMPVDGVLTFNVAGSTVDNPPGADYIYTNVFDVDLQSGYRDIEEGYTGSHIPLHYAGHIQGRFICNIMVKNADLGATGDKLNKMTLLRTNGEKPEIKFVYTNKTADEVAITNTFTAEPESVQMLYKTTDAVVFRLIAKLITDIIIT
Ga0233433_100083143F056157N/AMAKKKLASSDYWAQHIIRAQQGGKDYIFALVRRRYSDDDIEPVGPGEYLGLSEKKSYPKMTDGDPDSETFGKRIDNPKAEATGIKIIYTDPFTPENLKKYQSMVGINSFGETAYLYKFKQMTIQADKVNEFWTITQDDAYNKYILKEQVITIEENKSNARRGISKKAG
Ga0233433_100083144F056357N/AMRNQLLALMSLLLIGTFGVTYAETSTVEVEVPFISHGQTCSFDQIAVEFHCIWQGWKEVYTIEDLKEYKELLTVERYDQEIQKLNEMALEEIAVEQAKLTPNEKTIQSIEKKLDRGIATATDSVYMNLLKELNTCKQGMDKQTAPFQTAREFEISEFNLWQVNNVKVNGHLGDLILAVEECRGQQKLLKIVGEGYSSMPTGEDDYQFSLQDKYTPDIQAVNYDSLLATNNSVNTSLICDSNQHSQQYKKQFGCMMLYDGLSAEEIKRQNEIRFGTDGKIQYQSQVLDDYMDFMSNYGDRQATVEDKKVQELIAEPIANDMIESNNFYQNKLKNGD
Ga0233433_100083145F006550N/AMAKVFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEANGYAIYDFSKHFTNQKNAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELSYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVAANKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRIGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPCIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAIIQAETGRQLTGCSTPTNWT
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