Scaffold Ga0233433

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233433_10177445

Overview

Basic Information
Taxon OID	3300022931 Open in IMG/M
Scaffold ID	Ga0233433_10177445 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	952
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	48.5847	Long. (^o)	-123.5008	Alt. (m)	Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050389	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233433_101774451	F050389	AGGAG	VNKFLIAAAAALFSANSFAAIALSGEYTGTLNDSGVYTQDLATTLVGSSAAGAVTVTLDETMAVDDLYVESTLAGVKFKLGDWSGTDADFSKLNAS

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