NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233344_1000962

Scaffold Ga0233344_1000962


Overview

Basic Information
Taxon OID3300023045 Open in IMG/M
Scaffold IDGa0233344_1000962 Open in IMG/M
Source Dataset NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-281
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3063
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050386Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0233344_10009622F050386N/AMTEGMKKIEAFRLWGPRKSYQWKRNSEVHKLMVDIQTAHDKLGSQDGNSREHEIKVPNDY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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