NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233356_1000006

Scaffold Ga0233356_1000006


Overview

Basic Information
Taxon OID3300023046 Open in IMG/M
Scaffold IDGa0233356_1000006 Open in IMG/M
Source Dataset NameSoil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)118686
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (51.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)40.282Long. (o)-123.2869Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003710Metagenome / Metatranscriptome473Y
F006090Metagenome382Y
F081482Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0233356_100000616F003710N/AMRRMLIKGMTEQEIRVLQEFRRLAVESLGIAALKAIKHPAGGGEGPVISLVDQGMLTTDAARENFTLTAKAKEFLSYDPKPEFEEASAAAEEAVVAE
Ga0233356_100000618F081482N/ALVELHRAVSIEFGGNQAHPGVVESQFGLLNTVQRPQVTMLGREAYATFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS
Ga0233356_100000674F006090N/AMSLLLQRKGPAAPLPRLEGKEVLVGPNPDAAKVKGVMFGGRKQFLNEVAGEDGFAAIIAKLTPRTASYTKTPLASSWCEFASLIELDRTTYETLKQKYPNVLALIGAASAELGIGRVYKSLDSTELVKFMESQALFHNQFQKFGNVRFDKTPNGGRMLCSDYPVYSPIYCASAVGFYLESILRHGGTDPTVVETKCQTLGDSYCAFEMTWR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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