NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233356_1000008

Scaffold Ga0233356_1000008


Overview

Basic Information
Taxon OID3300023046 Open in IMG/M
Scaffold IDGa0233356_1000008 Open in IMG/M
Source Dataset NameSoil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101555
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (55.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)40.282Long. (o)-123.2869Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002064Metagenome597Y
F066879Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0233356_10000085F002064GGAMTAIEATPVILTNQQLNTVFQYTVEAYKTFEKLAENLPNPLTANMFKQFAVDERATRDLIEMKIAATGTARSKVTLANDLAFQDILEGDLSYRETTEFLIARERTMERKLAELGRGVSAIERGFLVYLAASKRAHIVELERELELTKLDRDWFKREDAETRLVRGAATE
Ga0233356_100000850F066879AGGAGLRLGVITLGHVHAEELNALTPHLQHLEQLVLDVPFDDPLSKHRAELNRAVDAATDDWLLIVREREIVDDAIAREITDAMRAQNAWGFRIRSIPMYAGKPLRIGVTDGELRLFHRRHLLRRGELGVQGTVVRLNNVLRSMSFDTVAAHREYLEKNGVPHSLLRRLLLFVHHAIVTRARDANTLRYLWIEAGYDHGDQAKSASA
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