Scaffold Ga0233356_1003425

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233356_1003425

Scaffold Ga0233356_1003425

Overview

Basic Information
Taxon OID	3300023046 Open in IMG/M
Scaffold ID	Ga0233356_1003425 Open in IMG/M
Source Dataset Name	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1503
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	40.282	Long. (^o)	-123.2869	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005250	Metagenome / Metatranscriptome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233356_10034252	F005250	N/A	VTVLTISGKLPTASAANGLYAVSMFKLAKEHSLTKAGLRRVHIVETAELGLRPGDIVFEFPFGRIVDTGMACRRDGIIPPDVDIMTIHKEAAAIRAACNRKAQEEEQLNVLPFRRAV

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