Scaffold Ga0136601_1000025

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0136601_1000025

Scaffold Ga0136601_1000025

Overview

Basic Information
Taxon OID	3300023049 Open in IMG/M
Scaffold ID	Ga0136601_1000025 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	78802
Total Scaffold Genes	131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (9.92%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Rauer Islands
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015094	Metagenome	257	Y
F046756	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136601_1000025131	F046756	N/A	DFNDYEIVRNRDTVMLDRLETFIRDNDLEMPDLEEIKKHYKIIE
Ga0136601_100002524	F015094	N/A	MGTKNKMFSFRIPPKLLEEYHEMCDENSINISKRIRKFIERDLEGWRNKKKE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.