NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136601_1000175

Scaffold Ga0136601_1000175


Overview

Basic Information
Taxon OID3300023049 Open in IMG/M
Scaffold IDGa0136601_1000175 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33453
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.63%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041523Metagenome159Y
F043167Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0136601_100017540F043167AGGTGGVGGKFNCSFNKLKDLEHFPEVNGTIYIYRNPVNLLVYTFIKKADSFMIEDFNDYEIVRNRDTVMLDRLQTFIKDNDLEMPDLEEIKKHYKIIE
Ga0136601_100017543F041523N/AMKHIKPYKIFESTSPNFPTTREGVIEVCERHRIKNYTINDDLSIDVNGDVNLAYKNLEHLPLKFNYIE

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