NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136601_1001167

Scaffold Ga0136601_1001167


Overview

Basic Information
Taxon OID3300023049 Open in IMG/M
Scaffold IDGa0136601_1001167 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8969
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039135Metagenome164Y
F041523Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0136601_100116713F041523N/AMKHIKPYKIFESVSHNFPTTREEVVKVCEYYKIENYTIDDD
Ga0136601_10011672F039135N/AMRYIKDYNSYKESIQFNFEYEHFDDLMESLNIWHDSLISSINAEEVNIFTTLDLPTDVYVDNLDIEFLSDNIEFINSLSSIGLKKSDVKNSDDFQTFLNKACKFMFIYDMNANELENPDYMLFQTWNSSLDRWEDAKMYKVNDDVKKFYEKLTSRSIEIIDGDERYIYQTSNGSEWDLQNTDAMNDIYLKTFRKDELQILLNERKAKVSII
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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