NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136601_1015089

Scaffold Ga0136601_1015089


Overview

Basic Information
Taxon OID3300023049 Open in IMG/M
Scaffold IDGa0136601_1015089 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1273
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002760Metagenome531Y

Sequences

Protein IDFamilyRBSSequence
Ga0136601_10150892F002760GGAMALKLGSTAINKLYLGSTAINKAYLGTGVVFSSAFDPADVFGATDIGLFNRIHPDNLFTDTNGTINATVGDDVAYIEDLSGNENHRIQAVVARRPTLQQDPNGAYKLVYDGVDDFIDVTYSGVISTPISNVSVVRKDPNRRISTETTDSRTSRLKVDIVGDGTLTFYAQDSGPANSSAKGISIPLEIEILILGTVWAQENSLYRINGVQNTGVFDPGTNSGMAGYRSATNHDNPPTAYTALEEYGVIQIDRELTTEQFEKIEDYFKLEVGID
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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