NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136601_1024219

Scaffold Ga0136601_1024219


Overview

Basic Information
Taxon OID3300023049 Open in IMG/M
Scaffold IDGa0136601_1024219 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)907
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004689Metagenome428Y
F004915Metagenome418N

Sequences

Protein IDFamilyRBSSequence
Ga0136601_10242191F004689N/AMKTLIYILFFIPLISLSQGISLNVSQDARLALVGDERGNGAFTTNVNLAAEFRGWQKGNSYFLMRPEIEYADIKGGELYRMTANFGYTFNKWIKNIDFTATVGGGMLIRHELSGLHTQANLQTTWYFTDGIGLFLDSEFVQRRDLP
Ga0136601_10242192F004915N/AEQWKQQAERFSSIADAVNSLTFPKKDVNEMPATIEMTVVQPLSLGFKGRVIYTQQFEKIIETQSEIFDDEGNSTGEYETIETAIIKKHVVVDYYETIPRDMANVMFSQFLGSVPSEITDYLDIQDWCIEQAFIQQVVMRNTFGGLLASDYTLTK
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