NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255764_10238926

Scaffold Ga0255764_10238926


Overview

Basic Information
Taxon OID3300023081 Open in IMG/M
Scaffold IDGa0255764_10238926 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)870
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038142Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0255764_102389261F038142AGGAMANITLNYKGLTGKRGTVTVDDTGNILSIITAIVADEDPTLGVLTGNDYDIALERDTSITDVNNGSDTISDHIVDGDTILCIDDKKNLTSTNTKEVRQLRKLRIASVKRLADGKANYTYDVTALPDTYNGNLPGADDNPNTDGLKLKRPWVTGVVIAEPETLTEAIIGGGGDLVDLQIWYDAADTATVIPNATDESQITQWTDKSNFAHNANPDGGSAKPTYEDTTPQNGYGYIEFDGVDDRLTINPFAQL
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