NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255778_10158791

Scaffold Ga0255778_10158791


Overview

Basic Information
Taxon OID3300023084 Open in IMG/M
Scaffold IDGa0255778_10158791 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1179
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044932Metagenome / Metatranscriptome153N
F050808Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0255778_101587911F050808N/AKADERDYFNQHTVEVFYKDDLLFEEDCIGCRSQHIYVLHTLDKEDVDWVESGYPIIDDKVLSRFDLNKIDPFQGTDKHNSEFVIGIFTAGAGASGKSGSYTSYHVGVDTGKVVKSTYSYDYYPNAWGYPYPRIENIEESFGPNRKL
Ga0255778_101587912F044932N/AMKKITLLTLATVFSLQTLSNINEIDEERVWDVKNIDNEFIWYRVPGQTVWGHKYGFIKHPLNCDADNFVIEWSSYEDIKKYEGKIFTLELENNKGQKTQIKPYLNYVQNFTNIMQVGFFSDDQSHTTTSNAFDIFNNESDTVTISIGDEYENFDIKSDTFLTRGLKEARKKAAIKCRGLSSNFALKAV
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