NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255778_10379092

Scaffold Ga0255778_10379092


Overview

Basic Information
Taxon OID3300023084 Open in IMG/M
Scaffold IDGa0255778_10379092 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048963Metagenome / Metatranscriptome147N
F099219Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0255778_103790921F099219N/AIPTGLFTRTIHGYDEWLNRYNPYDDEIDEELEEHLEKMREMDNIDDQKDYCDDHHLKYRDIEAYL
Ga0255778_103790922F048963N/AMNETYADFEPTDLPFDWSGVDHDEIKRGFDFFYSNNQITGFKLDNNGNYVRDQDGKLIAYRTSKPRHQPKSWFNNYYQ

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