NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255774_10036098

Scaffold Ga0255774_10036098


Overview

Basic Information
Taxon OID3300023087 Open in IMG/M
Scaffold IDGa0255774_10036098 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3081
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013173Metagenome / Metatranscriptome273N
F048697Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0255774_100360984F048697AGGAMADFQDLRVQRNLFGNSRSPFNGWVYESNYKMFVCDPDSVPDSRAKFDSVGHRMMNAINPNWVVFRSHTGQIMMLVDGNRWDEASIKQTMDEQVYQATLGDTAWIVTDSDGAWTYNALDGVTHGTDGGFPVIDINYSYWRSGIVGSVVYDANTEDELNETITFDITNANPNTFTGGLNGNELAIWNAWNSWPHNNWNLGNYFDGTGRYNEFPLDVPVSFNNVRMFEVIVDAMDDWINDTYSIVTGEEDDMDEADGQLWRAGSPLASVLSVLNPICWTFRLKGTEGTAINQKSRNLVFMTDNATSMEDVWQKLESSIKANSDNDGPDPRLVINPYWGVRPA
Ga0255774_100360985F013173AGGAMAANGISTLSTKQARQVAKLELAQAKRKGRVITEGSGTWSDNGVDDPTANYARANSMYDLTALPTNYNGNAVTDIPNTGGLKLKRPWVTAQVIAEPETLSDAVIGGGGDLTELQIWYDAADKATVIPNATDESQITQWTDKSRFAHNANPDGGSAKPTYEDTTPQNGYGYIEFDGVDDRLTINPFSQLAGATGWTMFVVAQKTDDAETTGVLTRTDYGDLRIELAATGSGVTVTTAGQTEVYASQSDKNWNAWTLVYEASQPAVFRKNG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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