NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224555_1003383

Scaffold Ga0224555_1003383


Overview

Basic Information
Taxon OID3300023088 Open in IMG/M
Scaffold IDGa0224555_1003383 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16398
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008510Metagenome / Metatranscriptome332Y
F094508Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0224555_10033836F008510AGGAGMKQAFRISILMFGLVGTYASVAVPQVPAPDGGPILTCPPQQKLQTKCTGGQLPPM
Ga0224555_10033837F094508GAGMSAPIKILYYALWVAHPILQIAIAVAMLRRRQHREFKFFFAYVVAQIVTFAVVFPAYLNHISAVFYLSWFSTAISVALGFKVIHEAFLDVFRPFHTLRDLGTVLFKWAGLVMLLVAGVVSVSTNSSDNAPWVQAIMTAQRCVRIIQVGMVLFLLFFARYLGVSRRQHSFGIAMGFGTFAVVELLLIASWAGEHLSNLAMGLINMTAYNATLLIWLGYTLVKSPAREAASTLLRPQRWEQSLTDIHHHPLPADSLIPMFEGMVDRALSRTHASPLASENVAPVQAAAAAAGASMGGLSVSRMVDQVTSKGLGS
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