NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000002

Scaffold Ga0224558_1000002


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000002 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)420730
Total Scaffold Genes359 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)247 (68.80%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000688Metagenome / Metatranscriptome937Y
F000858Metagenome / Metatranscriptome858Y
F001303Metagenome / Metatranscriptome727Y
F001371Metagenome / Metatranscriptome712Y
F007333Metagenome / Metatranscriptome353Y
F009018Metagenome / Metatranscriptome324Y
F077547Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_1000002137F009018AGGAMTRHIRRFIPTALAIAAFALTTSAAMAQSYTGNWPATVTQSQRSNGTYCVTLTDDGSYGWPHSGEAKLNGQNGPYPGYFTVINGLITVTFTYPSGEGDCCDFFVFTARASNRNIGKGAFNYLGLTDNGLVAFGKKDGC
Ga0224558_1000002192F000858AGGAGMSSNPYLFAAYAATWVIHIIYLATIRRRYARLKREIEELKK
Ga0224558_1000002199F007333AGGAGGMQDEVHHARSLGLSVALGGAMGAAIGAATGHMGVWVAAGIALYIAITIVGGAWKTNRN
Ga0224558_100000244F000688N/AMTHFPQPDATRRAPRVQLNGFVAAAIHAQGGLRARAKLQSISVNGGLLQLQQELSTGDFVEIAFHTRSGAISGMAEMLEPARKAEAACLQPFRFVALGDHDHHALRMALDAARDRSLLETDTVLSEAADF
Ga0224558_100000248F001371N/AMPANNSTLEPTTKVRKVADGDLAVGQICADRDGNRIRIDRLDRAARTLSYHYLNDELRVQEGNLENSIPQFLSEGWYLASSGTR
Ga0224558_100000257F001303N/AMDTGNLSPHRPECDLDGEGLARRGERETMDHESKESMDEVQLRILRVTDDLRIIQSELNCAAMQAPNDPELLEALSEPSQMESLQMLKTVLDQMRHFLWFYMQVVTSDSEMGEKFRQTLRLEPPVHAPEIDQQFQSATDAIMLRYLADSRGRKPN
Ga0224558_100000269F077547N/AMAMELDEWLKGSPEAPDLEEAPQGWHKFFDSFTICGEGECIKTLFTIYVPGDPRRGGVNLDEWKKRRRE
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