Basic Information | |
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Taxon OID | 3300023090 Open in IMG/M |
Scaffold ID | Ga0224558_1000002 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 420730 |
Total Scaffold Genes | 359 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 247 (68.80%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000688 | Metagenome / Metatranscriptome | 937 | Y |
F000858 | Metagenome / Metatranscriptome | 858 | Y |
F001303 | Metagenome / Metatranscriptome | 727 | Y |
F001371 | Metagenome / Metatranscriptome | 712 | Y |
F007333 | Metagenome / Metatranscriptome | 353 | Y |
F009018 | Metagenome / Metatranscriptome | 324 | Y |
F077547 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0224558_1000002137 | F009018 | AGGA | MTRHIRRFIPTALAIAAFALTTSAAMAQSYTGNWPATVTQSQRSNGTYCVTLTDDGSYGWPHSGEAKLNGQNGPYPGYFTVINGLITVTFTYPSGEGDCCDFFVFTARASNRNIGKGAFNYLGLTDNGLVAFGKKDGC |
Ga0224558_1000002192 | F000858 | AGGAG | MSSNPYLFAAYAATWVIHIIYLATIRRRYARLKREIEELKK |
Ga0224558_1000002199 | F007333 | AGGAGG | MQDEVHHARSLGLSVALGGAMGAAIGAATGHMGVWVAAGIALYIAITIVGGAWKTNRN |
Ga0224558_100000244 | F000688 | N/A | MTHFPQPDATRRAPRVQLNGFVAAAIHAQGGLRARAKLQSISVNGGLLQLQQELSTGDFVEIAFHTRSGAISGMAEMLEPARKAEAACLQPFRFVALGDHDHHALRMALDAARDRSLLETDTVLSEAADF |
Ga0224558_100000248 | F001371 | N/A | MPANNSTLEPTTKVRKVADGDLAVGQICADRDGNRIRIDRLDRAARTLSYHYLNDELRVQEGNLENSIPQFLSEGWYLASSGTR |
Ga0224558_100000257 | F001303 | N/A | MDTGNLSPHRPECDLDGEGLARRGERETMDHESKESMDEVQLRILRVTDDLRIIQSELNCAAMQAPNDPELLEALSEPSQMESLQMLKTVLDQMRHFLWFYMQVVTSDSEMGEKFRQTLRLEPPVHAPEIDQQFQSATDAIMLRYLADSRGRKPN |
Ga0224558_100000269 | F077547 | N/A | MAMELDEWLKGSPEAPDLEEAPQGWHKFFDSFTICGEGECIKTLFTIYVPGDPRRGGVNLDEWKKRRRE |
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