NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000005

Scaffold Ga0224558_1000005


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000005 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)280350
Total Scaffold Genes241 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)157 (65.15%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000439Metagenome / Metatranscriptome1137Y
F000482Metagenome / Metatranscriptome1089Y
F001499Metagenome / Metatranscriptome682Y
F006517Metagenome / Metatranscriptome371Y
F066959Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_1000005126F006517N/AMLPNVNYSITVPVAVDAAFRAFQNLQRLLHRGIYEEAVWTEGLPWQAGSRVRYVLVRPVRATISAVVTAISPPRSVDLLNHGLGVTAEQHVSFGPDLKGGTRVRMTMTLIGKSSELSEAEIQTAVTFITRDALDTIVADCQSQSANSTSGK
Ga0224558_1000005236F001499AGGAGGMEHIDLAELKRDTRSTRPCEFCRELDPHFSKRRPMDQMVGGSRKATAAAHLTEDGYVRHRIAELSRLTAHVPLNAA
Ga0224558_100000528F000439GGAGGMEVASNNHESLREVRAVPHDASIHQVVQAAHDELRQLLQQRAEIMKRIGTVKQTITGLADLFGEDALGPELLDLIDRKPNGRQPGFTKACRRVLMEMRRPMGAREVCVELERQAPAILARHKDPLASVTTVLNRLVDYGEARSLSNDRGRRVWEWVSEAEQPAMAMPARIPA
Ga0224558_100000547F000482N/AMRASKAHFVIAFGVAGLLLFSFLGYLYWLSNQPPVLARSEERDPLTNLPISITMNPLRDRTIERTASDFIKQMRDGDCRVLLADWEKDYRRKRAEFICDSETQHPLIGWNLVEWEDAPPLIILHYKGERYSTTAQRSTYKDLFSVTEEKKAGGWVVTKYDSFY
Ga0224558_100000578F066959GGAGGLKSFLCAILMLCAMAQAENLATTPAPSPDAPSRPSFWTFENKLDLGLLASLVTADAITTQRGLSQGFHEANPLMRPFVTRGAAGEAAGSALGFGAGLGTTYLLHRTHHYKAEHIAMRLMVGTEGAVVAHNFIVLH
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