NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000514

Scaffold Ga0224558_1000514


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000514 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44492
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001021Metagenome / Metatranscriptome804Y
F010868Metagenome / Metatranscriptome298Y
F022542Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_100051411F010868GAGMPIQGESKPQNGSQEAAEHVAAASQLLKSLQAKIGEHPEIREAVNKLEMALAVLGVQTGGML
Ga0224558_100051412F022542N/AMDKKEINSPKLTANFLFWICGIGGLLLFAMLAHFIWRAF
Ga0224558_100051413F001021AGGAMKKILVMIVSLCLVFAAGIAVAQKVHDWADLEKAHDHTKQAIQEMERARAANNYDMAGHGAKAEEHLRAAEHEIHESIEAAKAGR
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