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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023090 Open in IMG/M |
| Scaffold ID | Ga0224558_1001183 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28144 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (35.48%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0475 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001878 | Metagenome / Metatranscriptome | 623 | Y |
| F005307 | Metagenome / Metatranscriptome | 405 | Y |
| F008094 | Metagenome / Metatranscriptome | 339 | Y |
| F011616 | Metagenome / Metatranscriptome | 289 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224558_100118311 | F005307 | N/A | MNKGVAVRAALKAGVLGVFISMIPLLGIVLTGALAVFFYRRESRFVLPAALAARLGGAAGVVACAINALLITIRIFVFHAQQEYIDAILKFAQKFGANAADPDFQAGIHNLFTPSGLAFTFFFGMILTVVLASIGGALASLFMRPRNPRV |
| Ga0224558_100118316 | F001878 | AGGAG | MSAPSRRPEIRRRRTRAEKIAKLRKRLAAASASNDKDRLTAKLQRVGLVSPGNPLIKNA |
| Ga0224558_10011834 | F008094 | AGGAGG | MRTLTRLFGSRFGLFAAPLLCLSTILIQAIFAQTNPPPPDPHEMVTREPRTLTKPADRSAALDLLDRARQNLNLHDISTPYALKLSFETNGAAEMEGEWTMDEISDGGAHWRWMATAQSQDSVVIRIGANGHVYGTNPSEPVPLRVQLVRSALHWPIMRNAGASAIRAADVERDGKAMSCLLLSASIPPNPAPRAWVEREYCIDRATGLLQTWSEAPGIYAVYDYDGATAFHGHTLPRQISIFEDGRPAVQVRVESLEDAPNLDPNLFKPAPEMADAGESSTLASPSRFPMRVDPSDAPTSPFFQPIIVHAILDAQDGSVLDAEALQNSDRDLSRAAIEMVRSTSFPPSGFQQEAFINVQFHMPAATLDGPPIFHSRVRWMIWDRRAKAPPVRRPPRPGN |
| Ga0224558_10011836 | F011616 | N/A | VNAPVRSKPAADQHPDSPHPDSKHHHHAIYAAEATGLLLMAVLLLILTIIRYWRYIPWSA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |