NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224559_1018935

Scaffold Ga0224559_1018935


Overview

Basic Information
Taxon OID3300023091 Open in IMG/M
Scaffold IDGa0224559_1018935 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2934
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057304Metagenome136N
F058930Metagenome / Metatranscriptome134N
F088757Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0224559_10189352F088757N/AMSRKQAVKVVTLNLPGMLAVLTGTRACDWKAQDGPDSGCGVDYYYGHRQGNEAYIHVDQGHFTISVAGETLFTGDPAEHPRLKRCVSES
Ga0224559_10189353F058930GAGMKTLMPKLLIGLCALILFASPHLALAQTQGGLTVDNFNDAANESSGLTSTLYTVTHYALYIFYLLGIIFMGVAAIKFKGGDMEAMGKNLGGSVMLFMVPKIVEVIITWAAK
Ga0224559_10189354F057304N/ANAVVLSIFASVLFLSGVAVAWHPEITELFDVLQAPKLRIALRILAFGFFSCYCTLGSLCRILIQFFPEKFGQDQGHI
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