NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224559_1020057

Scaffold Ga0224559_1020057


Overview

Basic Information
Taxon OID3300023091 Open in IMG/M
Scaffold IDGa0224559_1020057 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2838
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010969Metagenome / Metatranscriptome296Y
F067668Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0224559_10200573F010969AGGAGMSEKKQIELLVCKCKSCTHWEIGRDVIICKTCGLVLPAKVAVDDHHMLHWQKHER
Ga0224559_10200574F067668GGAGGMRISYGDGSSSEGMVLALSGGELRVAIRGADDPAQFRLVNGAWVAEDGQQVSFAFPLGMAGSREFLAAMREVTVEGLSAPTACVSGGECLLKLMAADPGDLTSYPS

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